Sorry I'm jumping in late here . . . not too sure if this was mentioned before. Check your preferences - is iTunes set to import music when adding music? This will create a new copy of each music file, and that will be put in the Music/iTunes/iTunes Music folder. The original files will not be referenced by iTunes. The other thing to do, is to go in iTunes, get info on a track, and look under the Summary tab. At the bottom is the path of the file iTunes references. You mention two different song counts - see which files are unique to the one location, and see where iTunes references them. Hope I'm not stating the obvious . . . if so, don't take offense!